FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925879

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925879
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503457
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG20090.39904103031639243No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG16490.32753542010539133No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG15310.3040974700917854No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG14240.2828444137235156No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14060.2792691332129656No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12340.24510534166770948No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12030.23894791412176214No Hit
GTCACGGTGCGGGGTCGCCTCACAGGACGGGGTACGGCGGCGCA10980.21809211114355345No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC10320.20498274927153662No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG9130.18134617256290012No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8460.16803818399585266No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7960.15810684924432472No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7840.15572332890395804No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG7440.1477782611027357No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7250.14400435389715507No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7120.1414222068617578No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6850.1360592860959327No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6800.13506615262077992No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6620.1314908721102299No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG6560.1302991119400465No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG6550.13010048524501597No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG6490.12890872507483261No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG6440.1279155915996798No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6400.12712108481955758No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6210.12334717761397697No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6100.12116228396864082No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6050.12016915049348803No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6030.1197718971034269No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5840.11599798989784628No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC5840.11599798989784628No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5750.11421034964257126No Hit
CAGCAGTGCAGAGAAACGGCGACGGGCGCCCAGCGGCGGAGACG5720.11361446955747959No Hit
TTCCTCACCGGCAGCTTTTGCCTGTTCTTCAATGTTAGCAACAA5710.11341584286244902No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG5410.10745704201153226No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5360.10646390853637946No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG5330.10586802845128779No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)