FastQCFastQC Report
Sun 21 May 2023
EGAF00007925881

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925881
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462972
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG18500.3995921999602568No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG14980.32356168407592684No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG14410.31124992440147564No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG13190.28489843878247495No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12930.27928254840465516No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10910.23565140008467034No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10530.2274435603017029No Hit
GTCACGGTGCGGGGTCGCCTCACAGGACGGGGTACGGCGGCGCA10160.21945171630249777No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC9730.21016389760071885No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8270.1786285131714229No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7740.16718073663202093No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7720.16674874506449636No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7470.16134885047043881No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG7180.1550849727413321No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG6990.1509810528498484No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6750.14579715403955315No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6630.14320520463440553No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6270.1354293564189627No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG6160.1330534027975774No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5980.12916547868985598No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5960.12873348712233137No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5900.12743751241975756No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5870.12678952506847066No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG5830.12592554193342145No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5790.12506155879837225No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5770.12462956723084766No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG5740.12398157987956075No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5550.11987765998807703No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5480.11836568950174094No Hit
CAGCAGTGCAGAGAAACGGCGACGGGCGCCCAGCGGCGGAGACG5410.11685371901540482No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5220.11274979912392111No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG4900.10583793404352747No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC4890.10562193825976517No Hit
TTCCTCACCGGCAGCTTTTGCCTGTTCTTCAATGTTAGCAACAA4860.10497395090847826No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA4750.10259799728709297No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)