FastQCFastQC Report
Wed 31 May 2023
EGAF00007925882

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925882
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462972
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64141.3853969570513984No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25910.5596450757281218No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG18970.409744001797085No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG15460.33392948169651726No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG15050.32507365456226295No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG13020.2812265104585159No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11360.2453712103539739No Hit
CCGGCTCTGGGCGCTCGTCGTAAGAAAAAAA10660.2302515054906128No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10460.22593158981536682No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10250.22139567835635846No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC9820.21210785965457957No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9120.1969881547912185No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8910.19245224333221017No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8840.19094027284587406No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8210.17733253846884908No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG7960.17193264387479157No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA7740.16718073663202093No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7360.1589728968490535No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7080.15292501490370908No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6950.15011706971479916No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6940.14990107393103685No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6450.1393172805266841No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6300.1360773437702496No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6280.135645352202725No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6240.1347813690676758No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6150.1328374070138151No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG6000.12959747025738058No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6000.12959747025738058No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5870.12678952506847066No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5620.12138963047441313No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5290.11426176961025722No Hit
GTCGCGGGTAAACGTGAAGGTCTGGGCGGTC5290.11426176961025722No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5240.1131817906914457No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5160.1114538244213473No Hit
ACTACCGACCCGGATGCAGCGGCTTCCGCGA5050.10907787079996198No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG4950.10691791296233896No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG4950.10691791296233896No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC4850.10475795512471596No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG4700.10151801836828145No Hit
TTCCTGGAAGGCGAAGCAAGCCCGCCGCTGG4680.10108602680075686No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4670.10087003101699454No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)