FastQCFastQC Report
Wed 31 May 2023
EGAF00007925884

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925884
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504518
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30480.6041409820858721No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30270.5999785934297686No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG21270.4215905081681922No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG17110.33913557098061914No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG16530.32763944993042865No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG13640.27035705366310026No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12870.25509496192405423No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11890.23567048152890482No Hit
CCGGCTCTGGGCGCTCGTCGTAAGAAAAAAA11610.23012062998743354No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10770.21347107536301974No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC10690.21188540349402796No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10590.20990331365778825No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10300.20415525313269298No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA9340.1851271907047915No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9110.1805683840814401No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8770.173829278638225No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG8770.173829278638225No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7770.1540083802758276No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7680.15222449942321187No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7640.15143166348871598No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7240.143503304143757No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7130.1413230053238933No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7050.13973733345490152No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7020.13914270650402957No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6940.1375570346350378No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6900.1367641987005419No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG6560.1300250932573268No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6560.1300250932573268No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6500.12883583935558296No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6190.12269136086323976No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6150.12189852492874387No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5920.11733971830539247No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5630.11159165778029724No Hit
ACTACCGACCCGGATGCAGCGGCTTCCGCGA5600.1109970308294253No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5430.10762747810781775No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5400.10703285115694584No Hit
GTCGCGGGTAAACGTGAAGGTCTGGGCGGTC5400.10703285115694584No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG5370.1064382242060739No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5200.10306867148446636No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)