FastQCFastQC Report
Sun 21 May 2023
EGAF00007925886

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925886
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467694
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65381.3979225733064782No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28690.6134352803328672No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG19360.4139458705905998No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG16200.3463803255975061No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG14830.3170876684327787No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG13200.28223582085722715No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11780.25187408861349514No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10770.23027877201760127No Hit
CCGGCTCTGGGCGCTCGTCGTAAGAAAAAAA10680.22835443687539292No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC10320.22065709630655939No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10050.2148840908799343No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9420.20141374488447575No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9010.19264732923663763No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8900.1902953640628274No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8320.17789409314637347No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA8000.17105201264074374No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG7710.16485137718251677No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7110.152022476234461No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7030.15031195610805356No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6980.1492428810290489No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6910.1477461759184424No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6730.14389750563402565No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6570.14047646538121078No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6370.1362001650651922No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6270.1340620149071829No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6260.13384819989138197No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG6150.13149623471757174No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5880.12572322929094665No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5870.12550941427514573No Hit
GTCGCGGGTAAACGTGAAGGTCTGGGCGGTC5370.11481866348509924No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5370.11481866348509924No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5200.11118380821648344No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5160.11032854815327969No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5090.10883184304267321No Hit
ACTACCGACCCGGATGCAGCGGCTTCCGCGA5010.10712132291626578No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4920.10519698777405741No Hit
TTCCTGGAAGGCGAAGCAAGCCCGCCGCTGG4740.10134831748964065No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC4730.10113450247383973No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4720.10092068745803881No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)