FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925887

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925887
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459482
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA51371.117998093505295No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA44930.9778402636011856No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21280.4631302205527094No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17750.3863045777636556No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14480.3151374809024075No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA14380.3129611170840207No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC14060.30599675286518296No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12200.2655163858431886No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11750.2557227486604481No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT10340.22503601882119428No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9940.21633056354764713No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9700.21110729038351883No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8790.19130237963619903No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA8460.1841203790355226No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7910.17215037803439526No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7490.1630096499971707No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA7450.16213910446981603No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6350.1381991024675613No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6120.13319346568527168No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5960.12971128357585282No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5940.12927601081217543No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5740.12492328317540186No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5670.12339982850253112No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT5510.11991764639311224No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5320.11578255513817735No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA5220.11360619131979054No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5200.11317091855611318No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT4980.10838291815566226No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)