FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925888

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925888
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences459482
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT110482.404446746553728No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62361.3571804771460036No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24240.5275505895769584No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21490.46770058457132163No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15490.3371187554681141No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC14890.32406057255779336No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12690.27618056855328393No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12170.26486347669767263No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10810.2352649287676122No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10070.21915983651154997No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9050.19696092556400466No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG8730.18999656134516693No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8470.18433801541736128No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA7440.16192146808797733No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7420.16148619532429997No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7090.15430419472362356No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6580.14320473924985092No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6230.13558746588549714No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6050.13167001101240092No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5780.1257938287027566No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5560.12100582830230563No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC5540.12057055553862828No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG5390.11730600981104809No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5380.11708837342920941No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5310.11556491875633866No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC5230.11382382770162923No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5060.11012400921037169No Hit
ATGACCCAGGGTCGCCGCGGTAACGTTTACT5050.109906372828533No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)