FastQCFastQC Report
Sun 21 May 2023
EGAF00007925890

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925890
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503081
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT121602.4171057940967757No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28260.5617385669504513No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27250.5416622770488252No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23900.4750726026226393No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17120.34030305258994076No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC17010.3381165259669914No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14470.28762763849161466No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13980.27788765626211287No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11650.23157304688509406No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11210.22282694039329648No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10180.20235310019658861No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9500.1888363901638106No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG9480.1884388398687289No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA8210.16319439613104053No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA7830.1556409405244881No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7610.15126788727858934No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7290.14490708255728202No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6890.1369560766556479No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6630.1317879228195857No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6630.1317879228195857No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6520.12960139619663633No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6190.12304181632778817No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6120.12165039029500219No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC6000.11926508852451195No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5920.11767488734418512No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC5780.11489203527861318No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG5620.11171163291795953No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5140.10217042583599857No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5060.10058022465567173No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)