FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925891

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925891
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463654
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA50231.0833509470424065No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA46731.0078636224425972No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT22070.47600150111936923No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC17680.38131882826417973No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15290.32977176946602427No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA14620.31532133875691787No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC14040.30281201068037805No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12410.2676564852238954No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12000.2588136843422034No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT10280.2217170562531543No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10090.21761917291773608No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9530.20554120098176656No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8940.19281619483494158No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA8930.19260051676465642No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8660.1867772088669568No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA7380.15917041587045513No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7270.15679795709731825No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6380.13760260884193817No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6070.1309165886630979No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5950.12832845181967587No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5890.12703438339796486No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5850.1261716711168242No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5770.12444624655454284No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5550.1197013290082691No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC5480.11819158251627292No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT5400.11646615795399157No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT5150.11107420619686233No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)