FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925892

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925892
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463654
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT115432.489571965301712No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65851.4202400928278414No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25000.5391951757129239No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22160.4779426037519357No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16440.35457474754881874No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC15030.32416413963860985No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13160.2838323404952831No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12530.2702446220673174No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10300.22214841239372465No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10250.22107002204229878No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9430.20338442027891487No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9140.19712975624064494No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG9110.19648272202978947No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA7270.15679795709731825No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7190.1550725325350369No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7090.1529157518321852No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6970.15032761498876318No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6050.13048523252252758No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6010.1296225202413869No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5920.12768141760882037No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5500.11862293865684324No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC5460.11776022637570258No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5420.1168975140945619No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5390.11625047988370638No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5370.11581912374313605No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC5330.11495641146199538No Hit
ATGACCCAGGGTCGCCGCGGTAACGTTTACT4900.10568225443973309No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG4650.10029030268260385No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)