FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925894

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925894
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479069
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68041.420254702349766No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13970.29160726325435377No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12450.2598790570878099No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG12420.2592528424924176No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11480.23963145183679177No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11420.23837902264600713No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10640.222097443165807No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9890.20644207828099917No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8110.16928667895438862No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7690.16051967461889624No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7550.15759733984039878No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG6800.14194197495559094No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6470.1350536144062755No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5360.11188367437675992No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG4960.10353414643819575No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)