FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925898

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925898
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450813
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61621.3668638659488526No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27980.6206564584428577No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT15110.33517223327632517No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT14110.3129900867987392No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12440.27594590218117043No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11800.2617493284355154No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10760.2386798960988259No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA9680.21472317790303297No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8990.1994174968334986No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8820.19564653193230896No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8190.18167177965142975No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7510.16658792004667122No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC7500.16636609858189538No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7380.16370424100458505No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7320.16237331221592988No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7240.160598740497723No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6670.14795491700549895No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6580.1459585238225162No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6310.13996934427356797No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6220.13797295109058522No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6110.13553291497805076No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5580.12377637734493016No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5160.11445987582434401No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5150.11423805435956816No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4740.10514337430375788No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA4590.10181605233211997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)