FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925900

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925900
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493880
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32050.6489430630922491No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30100.6094597878027052No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT17700.35838665262816877No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT16230.32862233740989716No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13790.27921762371426256No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13630.27597797035717175No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13360.27051105531708103No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA10520.21300720822871952No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10380.2101725115412651No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC10330.2091601198671742No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC9250.18729245970681138No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9110.18445776301935693No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8500.17210658459544828No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8120.16441240787235767No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC8000.16198266785453957No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7830.15854053616263059No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7380.14942901109581275No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7210.14598687940390379No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7040.14254474771199482No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6770.13707783267190413No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6570.13302826597554063No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6170.12492913258281364No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5560.11257795415890501No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5260.10650360411435976No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5080.10285899408763262No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4990.10103668907426905No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)