FastQCFastQC Report
Wed 31 May 2023
EGAF00007925907

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925907
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487060
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10510.21578450293598325No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7980.1638401839609083No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6280.1289368866258777No Hit
ACGACGAGAACGGCGAGAGCCTGCGGACTCACCCTGACCGGACT5150.10573645957376915No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5040.10347801092267894No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)