FastQCFastQC Report
Sun 21 May 2023
EGAF00007925914

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925914
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440570
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61771.4020473477540458No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC30860.7004562271602697No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG26010.5903715641101301No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21330.4841455387339129No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC19980.45350341602923483No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC19340.43897678008035046No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG19220.43625303583993463No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18890.4287627391787911No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17880.4058378918219579No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG17770.40334112626824337No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17360.3940350001134894No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG17070.3874526181991511No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG14520.3295730530903148No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14080.3195859908754568No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13280.30142769593935126No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC12140.275552125655401No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC11570.2626143405134258No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11020.25013051274485326No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10870.24672583244433346No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG10830.2458179176975282No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10580.24014345052999525No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10240.23242617518215042No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9520.21608370973965543No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC9370.21267902943913566No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9120.20700456227160272No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9060.20564269015139477No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8330.18907324602219852No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8130.18453367228817213No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7970.18090201330095104No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7630.1731847379531062No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7060.16024695281113105No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6550.14867103978936377No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6380.14481240211544136No Hit
GAACAGGGCCCGGCGGACGATCCGGGTGAGG6270.14231563656172685No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6250.1418616791883242No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG6070.1377760628277005No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5980.1357332546473886No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5940.13482533990058335No Hit
GAACAGGGTCCGGCAGACGATCCGGGTGAAG5900.13391742515377808No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5650.12824295798624508No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5490.124611298999024No Hit
GTGCCATTCATTCCGCCGATGGCGGATCTGC5360.12166057607190683No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5230.11870985314478971No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT5130.1164400662777765No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5120.11621308759107521No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC5100.11575913021767256No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5070.11507819415756859No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5060.1148512154708673No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5050.11462423678416597No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5010.1137163220373607No Hit
GACGACCCGGGTGAAGGCCCGTCTACTGGCC4940.11212747123045147No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4800.108949769616633No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4730.10736091880972377No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4720.10713394012302245No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)