FastQCFastQC Report
Wed 31 May 2023
EGAF00007925915

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925915
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478954
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT26950.562684516675923No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC25370.529695962451509No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20810.43448848950003555No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG20700.43219181800339906No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC19360.4042141834080099No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG19160.40003841705048915No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA18080.3774892787198771No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG15460.32278673943635505No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15170.31673187821794996No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG15120.31568793662856975No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT13040.27225996651035383No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG11860.2476229450009813No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG11130.23238139779603054No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG11090.23154624452452638No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG11010.22987593798151806No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT11010.22987593798151806No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10960.22883199639213786No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10940.22841441975638577No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC10700.2234035001273609No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10550.2202716753592203No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10440.2179750038625839No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9810.20482133983639347No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9780.20419497488276533No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC9620.20085436179674873No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8650.18060189496277304No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8530.1780964351482606No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8480.1770524935588804No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8390.17517339869799606No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7760.16201973467180564No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA7520.15700881504278072No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7140.1490748589634913No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7100.14823970569198713No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6880.14364636269871428No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT6780.1415584795199539No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6760.1411409028842018No Hit
CAGCGCGCGCAGGCCCTCAGCGATGTTTTCGAACTTCGGGTTGG6420.13404210007641654No Hit
CAGTGCACGCAGGCCTTCAGCGATGTTTTCGAACTTTGGGTTGG6400.13362452344066444No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6170.12882239212951557No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC6090.12715208558650726No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5810.1213060126859782No Hit
CCAGTTACCATCTTCGGTGGTGCGTTCGACGTGGCAACGTGCCA5680.11859176455358969No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG5620.11733903464633347No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5590.11671266969270536No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5530.11545993978544912No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5430.11337205660668873No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5140.10731719538828363No Hit
TACCTGGATGTCCAGATCGAAGTAGAAACGGCGTGCCATGGCCG5100.10648204211677949No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5080.10606446548102741No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG4910.10251506407713475No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT4840.10105354585200248No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC4800.10021839258049833No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)