FastQCFastQC Report
Wed 31 May 2023
EGAF00007925919

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925919
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497668
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11150.22404494562640156No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9600.19289968412676722No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8640.1736097157140905No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7370.14809069500148694No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6100.12257167428888335No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5790.11634262198895648No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)