FastQCFastQC Report
Wed 31 May 2023
EGAF00007925921

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925921
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462055
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9040.1956477042776293No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8480.18352793498609474No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7790.16859464782331107No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6350.1374295267879365No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5800.1255261819480365No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5580.12076484401207649No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4650.10063737001006373No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)