FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925923

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925923
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500225
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10360.2071068019391274No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9630.19251336898395724No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7910.1581288420210905No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7020.1403368484182118No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6430.1285421560297866No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5600.11194962266979859No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5010.10015493028137337No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)