FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925926

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925926
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466315
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG69771.4961989213300022No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10880.2333186794334302No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10020.21487621028703774No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8180.1754179042063841No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6980.14968422632769693No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6270.13445846691614038No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5460.11708823434802655No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4980.10679476319655169No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4960.10636586856524023No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4880.10465029003999442No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)