FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925928

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925928
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469047
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28870.6155033504105133No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9200.19614239084782548No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG8480.18079211678147392No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7210.15371593891443713No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6670.14220323336467347No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6030.12855854530569433No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4970.10595953070801006No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)