FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925930

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925930
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435417
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63111.4494151583424624No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8440.19383717218206914No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6970.16007643247737227No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6120.14055491632159517No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5920.13596161840258877No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5190.1191960809982155No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)