FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925939

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925939
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434348
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT15020.3458056673450781No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG13560.3121920671903635No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12910.2972271082173741No Hit
TTTAGCTTCACGACCACGAGAACGAGAGCGGGCGCGACGGGTTG12500.28778767255748844No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11310.2603902861300156No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG10400.23943934356783042No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8430.19408400637277023No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7870.18119111864219473No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG7870.18119111864219473No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT6950.16000994594196358No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6860.15793787469954967No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6220.14320314586460625No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA6080.1399799239319624No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5950.13698693213736451No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5940.13675670199931853No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5770.13284278965253668No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5390.12409404440678903No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5160.11879875123173124No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC5130.11810806081759327No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4640.10682678405333972No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4600.10590586350115576No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4560.10498494294897179No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC4410.10153149087828194No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)