FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925940

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925940
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434348
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66551.5321815686960685No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29100.6699697017138332No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17890.4118817169642775No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA14660.33751738237542245No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA13320.30666654387725967No Hit
GAAATGGAGAACATCCTGCAGAACCTGACTC11950.275125014964959No Hit
TCCTACACCAACGGCAAACTGACTATCACCC10330.23782773260150847No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7920.1823422693324247No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7750.17842835698564286No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG7670.1765865158812749No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7120.16392385828874542No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6960.16024017608000957No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC6920.1593192555278256No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6180.1422822253124223No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5850.1346846307569046No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA5830.13422417048081262No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5770.13284278965253668No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5740.1321520992383987No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5640.1298497978579388No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG5230.12041036219805318No Hit
TCTATCGTAGTGACCGGCAACGCAGGTTCCG4950.11396391833276542No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4690.10797793474356966No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4590.10567563336310977No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT4510.10383379225874184No Hit
CAACAGGATCTGAGCAACCCGACCGCCTCTA4490.10337333198264986No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA4360.10038034018805198No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)