FastQCFastQC Report
Wed 31 May 2023
EGAF00007925941

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925941
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442918
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG20150.45493748278462376No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG18920.4271671054235772No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC18730.4228773723352855No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG18460.41678143584139726No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16550.37365832953278033No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16170.3650788633561968No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13540.3056999263972112No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13540.3056999263972112No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG13110.2959915830921299No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11940.2695758582852808No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11870.26799543030538386No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG10990.2481271928438221No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10780.24338590890413125No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10470.2363868707074447No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG9620.21719595952298165No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9220.20816494249499906No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8640.1950699678044243No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8470.19123178556753168No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCGGTT8420.19010290843903385No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8040.1815234422624504No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAGCCG7950.1794914634311543No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7890.1781368108769569No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7010.1582685734153952No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6940.15668814543549822No Hit
CGCCAAATTTAAATGGCCGCCTCATTTACGGCTGGCAGCGGAGG6940.15668814543549822No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6610.14923755638741257No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC6520.1472055775561165No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6460.1458509250019191No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6000.13546525541973908No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA5850.1320786240342456No Hit
GCAGCGCTCGTACAGGCCGTCCAGGCCCTGGGTAGTGGTTTCGC5740.1295950943515504No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5630.12711156466885518No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5620.1268857892431556No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5580.12598268754035735No Hit
TTTACGGGATGCTGCGGAGGTAGGCGCCACAGCCGGGTCCGGTT5340.1205640773235678No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG5250.11853209849227171No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5110.11537124253247778No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5100.11514546710677824No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5030.11356503912688126No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4820.1088237551871904No Hit
TTCGGTCGGCGGCAGCAGCTCCTGGGCGTTCGGCGGCGGCAGTT4510.1018247169905039No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)