FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925945

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925945
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466081
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20520.44026682057410627No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA18600.39907226426307874No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16370.3512265035476666No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14630.313893936890798No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12020.25789508690549495No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11940.2561786470592021No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11890.25510587215526914No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11180.23987246851942043No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10590.22721372465301098No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8050.1727167595332142No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7780.16692377505197595No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7700.16520733520568315No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7200.15447958616635304No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6680.14332272716544978No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6240.13388230801083933No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5850.12551466376016185No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5640.12100900916364322No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5540.11886345935577722No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCCACG5480.1175761294710576No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5370.11521602468240498No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5030.10792115533566055No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4960.10641927047015433No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4780.1025572808159955No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC4760.1021281708544223No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)