FastQCFastQC Report
Sun 21 May 2023
EGAF00007925946

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925946
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466081
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT41620.8929778300338352No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30530.6550363563414943No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24770.5314526874084119No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21470.4606495437488333No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14900.3196869213720362No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12540.26905194590639825No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12230.2624007415020136No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11850.25424765223212276No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10870.23322126411503577No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10300.2209916302101995No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8410.18044073884153183No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8090.17357497945636058No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7360.1579124658589387No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7180.15405047620477985No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7020.15061759651219422No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6080.13044942831825368No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5940.12744565858724127No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5820.12487099881780205No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACC5320.11414324977847198No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5290.11349958483611218No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5280.11328502985532558No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5150.11049581510509975No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5140.11028126012431316No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5090.10920848522038015No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5050.10835026529723375No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5000.10727749039330073No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4950.10620471548936773No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4730.1014845059120625No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)