FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925947

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925947
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431665
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18980.43969281734678506No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16750.38803238622542946No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14950.34633338352657733No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13110.3037077363233063No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11550.26756860065096777No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10980.25436391646299794No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10900.25251062745416003No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10850.2513523218236364No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9440.2186881030428689No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7650.1772207614701215No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7560.17513581133517891No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7430.17212421669581737No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG6340.14687315395040135No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6180.1431665759327256No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6060.1403866424194688No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5580.12926690836644156No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCCACG5230.12115876895277587No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5120.11861049656562381No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5020.11629388530457647No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4890.11328229066521493No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4760.11027069602585339No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4600.10656411800817762No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4490.10401584562102556No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4360.10100425098166402No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)