FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925948

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925948
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences431665
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65351.5139054590944367No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40930.9481889891466762No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22090.5117394275653574No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18790.43529125595079515No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13590.31482747037633346No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11800.2733601288035861No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG11280.26131375024613995No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11220.25992378348951156No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10250.23745265425735235No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9670.2240163089432778No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7850.1818539839922162No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7460.17281920007413157No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6940.16077282151668537No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6610.15312800435522916No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6230.14432488156324927No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5720.13251016413190786No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5650.1308885362491747No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5450.12625531372708002No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5110.11837883543951908No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACC5090.11791551318730961No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5020.11629388530457647No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4960.11490391854794807No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4930.11420893516963385No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT4660.10795408476480604No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA4570.10586913462986344No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4390.10169923435997823No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4370.10123591210776876No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)