FastQCFastQC Report
Wed 31 May 2023
EGAF00007925951

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925951
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502590
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT16980.33784993732465823No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC16110.3205396048468931No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14360.28571997055253784No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT13860.2757715036112935No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10960.21807039535207623No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG9050.18006725163652282No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT8680.172705386100002No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG8280.1647466125470065No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7160.14246204659861916No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5750.11440736982431007No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT5660.11261664577488607No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5480.10903519767603811No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)