FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925952

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925952
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences502590
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30300.6028770966394079No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC16020.3187488807974691No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT15660.31158598459977316No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14670.2918880200561093No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT14220.28293439980898943No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA11520.22921267832626993No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC10170.20235181758491017No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC9790.19479098270956446No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA8670.1725064167611771No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7610.15141566684573907No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6210.12355995941025488No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG5920.11778984858433317No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT5740.11420840048548518No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5100.1014743628006924No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)