FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925954

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925954
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479715
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGAACAGAAACAGCTGCTGCAGGGTGACG42910.8944894364362175No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37750.7869255703907528No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG34540.7200108397694465No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG33630.7010412432381726No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29040.6053594321628467No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG29040.6053594321628467No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC25470.5309402457709265No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG22960.4786175124813692No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC20400.4252524936681154No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC19310.40253066925153475No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19310.40253066925153475No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG19060.39731924163305293No Hit
CGCACCATCTGGGAATCCGCTGCCGATATCG18090.37709890247334354No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18030.3758481598449079No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG17360.36188153382737664No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16870.35166713569515234No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG14470.30163743055772696No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC14250.297051374253463No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13940.29058920400654553No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG13110.27328726431318595No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG12840.2676589224852256No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12720.26515743722835433No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG11620.2422271557070344No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG11550.24076795597385947No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG11310.23576498546011695No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11070.2307620149463744No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10800.22513367311841406No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG10760.224299844699457No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10490.21867150287149661No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC10030.2090824760534901No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9670.2015780202828763No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9440.19678350687387303No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9380.19553276424543736No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT8990.18740293716060577No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8610.17948156718051342No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8470.1765631677141636No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8100.16885025483881055No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7460.15550900013549712No Hit
GAAGCCGTGAACCGTGCGGTGGCTCGTGTCG6830.14237620253692296No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC6510.13570557518526627No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6440.13424637545209137No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT6020.1254911770530419No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5840.121738949167735No Hit
GGCCCGGCTCACTCCAAAGAAGTTCCGGCAC5730.11944592101560302No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5550.11569369313029611No Hit
GTTGTTCCGCCGGGTGCCCCGGCAACTTGCG5490.11444295050186049No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5350.11152455103551066No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4810.10026786737958997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)