FastQCFastQC Report
Sun 21 May 2023
EGAF00007925955

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925955
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446635
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG37450.8384922811691873No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG31420.7034827095950832No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG27180.6085506061996933No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG27080.6063116414969718No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG21390.4789145499121206No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG17830.3992074064952366No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17570.3933860982681608No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16830.376817759468022No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG16630.37233983006257904No Hit
CTGGCCGTCGATGTTACGGACCGGAATCAGCAGTGCACCATCAA16420.367638004186864No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG16370.36651852183550326No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15780.35330863008944663No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG14350.32129143484052974No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12220.27360148667256257No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12210.27337759020229047No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG12170.2724820043212019No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG12040.269571350207664No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11200.25076404670480373No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG11190.2505401502345316No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG10980.2458383243588165No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG10580.23688246554793066No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT10570.23665856907765848No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG9980.22344867733160187No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG9780.21897074792615895No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG9710.2174034726342539No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG9700.21717957616398179No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8910.1994917550124822No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8830.19770058325030504No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8600.1925509644340457No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8570.19187927502322927No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8310.18605796679615347No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8080.1809083479798941No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA7880.1764304185744512No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT7560.1692657315257425No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7540.1688179385851982No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT7130.1596381833040402No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6970.15605583977968587No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6870.1538168750769644No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6670.14933894567152148No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT5820.13030774569838907No Hit
CAGGAAGTTTTCTACAGAGGATTCAGTGCGAGAGTGGTAGTTTT5700.1276209880551233No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5640.12627760923349043No Hit
GTTGCGTGGGCCGGTCGGCAGGGTATCTGCTACACGAGCTACCG5400.12090409394695893No Hit
TGGCTGTTCGTTATCTACCTCGATGATTGCAACGCACGCACCAC5160.11553057866042743No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4980.11150044219552879No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4970.11127654572525665No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4840.10836589161171875No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT4670.10455965161709226No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)