FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925956

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925956
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446635
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG63791.4282355838660203No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG38190.8550606199693263No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37380.8369250058772824No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG31930.7149014295789626No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG29800.6672114814109955No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG26990.6042965732645225No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC23610.5286195663125371No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG21740.48675092637164574No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC18920.42361212175490054No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC17460.3909232370951672No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG17170.38443023945727495No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16920.37883282770047133No Hit
CGCACCATCTGGGAATCCGCTGCCGATATCG16280.364503453603054No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16190.3624883853706046No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16090.3602494206678831No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG15300.3425615995163836No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC13330.29845399487277086No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12450.278751105488822No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG12360.27673603725637264No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG12270.27472096902392334No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12050.26979524667793614No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG11930.2671084890346704No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG10950.24516663494800003No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG10630.23800194789929136No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG10420.2333001220235763No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG10040.22479205615323475No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9820.21986633380724754No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9450.2115821644071781No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9190.20576085618010231No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9090.20352189147738084No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9030.20217851265574796No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8910.1994917550124822No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC8900.19926785854221007No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT8230.1842667950339763No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7530.16859404211492607No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7310.16366831976893884No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7220.16165325153648952No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7090.15874259742295163No Hit
GAAGCCGTGAACCGTGCGGTGGCTCGTGTCG6190.13859191509845847No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6060.13568126098492056No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC5700.1276209880551233No Hit
GTTGTTCCGCCGGGTGCCCCGGCAACTTGCG5420.12135188688750323No Hit
GGCCCGGCTCACTCCAAAGAAGTTCCGGCAC5370.12023240453614249No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5090.1139633033685224No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5060.11329161395770597No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5030.11261992454688953No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4800.10747030573063016No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4530.10142510103328221No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)