FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925958

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925958
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481441
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGAACAGAAACAGCTGCTGCAGGGTGACG43580.9051991832851793No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT40610.8435093812118204No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG34450.7155601620967055No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG34180.7099519982718546No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG30070.6245832822713479No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28840.5990349804025831No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC25550.5306984656479194No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG23900.4964263533849423No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC20510.42601274091737096No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC19420.40337237584667696No Hit
CGCACCATCTGGGAATCCGCTGCCGATATCG18740.38924811139890453No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18710.3886249820850322No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG18330.3807320107759829No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG18140.3767855251214583No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17720.3680617147272459No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG17450.3624535509023951No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC14320.29744039248838383No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG14190.2947401654616038No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13910.2889242918654622No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG12780.26545308770960513No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12510.2598449238847543No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG12440.2583909554857189No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG11970.24862859623505268No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG11920.24759004737859883No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG11730.2436435617240742No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11400.23678913927147874No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG11150.2315963949892095No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC10740.22308029436628787No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10520.2185106793978909No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10030.20833290060464313No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9810.2037632856362462No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9440.19607802409848768No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8950.1859002453052399No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT8520.17696872513973677No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8320.17281452971392133No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7840.16284446069196434No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7720.16035194343647508No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7360.15287439167000733No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7020.1458122594461211No Hit
GAAGCCGTGAACCGTGCGGTGGCTCGTGTCG6920.1437351617332134No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC6470.13438822202512873No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT6210.1289877679715687No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6160.12794921911511484No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5890.12234105529026403No Hit
GGCCCGGCTCACTCCAAAGAAGTTCCGGCAC5880.12213334551897324No Hit
GTTGTTCCGCCGGGTGCCCCGGCAACTTGCG5860.12171792597639171No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5430.11278640581088857No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)