FastQCFastQC Report
Sun 21 May 2023
EGAF00007925959

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925959
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449663
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG39000.8673161901246044No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG31120.6920738419660946No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG29090.6469289223262754No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG27310.6073437218539217No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG21360.4750224056682449No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG17800.3958520047235374No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17610.3916266181562637No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17440.3878460091223872No Hit
CTGGCCGTCGATGTTACGGACCGGAATCAGCAGTGCACCATCAA17430.3876236203556886No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG16300.36249368971874496No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG15710.34937275248352656No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15130.3364742040150068No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG14700.3269114870469663No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG13000.2891053967082015No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG12670.2817665674071471No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG12430.27642923700638034No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12110.2693127964720246No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG11640.25886052443718965No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG10980.24418286583508092No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10960.2437380883016837No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT10530.2341753713336432No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG10390.23106192859986258No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG10120.22505743189899993No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG10000.2223887666986165No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG9980.22194398916521926No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG9780.21749621383124695No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9310.20704394179641197No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8910.19814839112846733No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8790.19547972592808394No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8510.18925284046052265No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT8130.18080206732597523No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7810.1736856267916195No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7750.1723512941914278No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA7510.167013963790661No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7400.16456768735697624No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT7230.16078707832309974No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7080.1574512468226205No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6910.153670637788744No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6350.1412168668536215No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT5880.13076459481878652No Hit
CAGGAAGTTTTCTACAGAGGATTCAGTGCGAGAGTGGTAGTTTT5880.13076459481878652No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5740.12765115208500588No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5400.1200899340172529No Hit
TGGCTGTTCGTTATCTACCTCGATGATTGCAACGCACGCACCAC5300.11786604635026675No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5080.11297349348289719No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4950.11008243951581517No Hit
GTTGCGTGGGCCGGTCGGCAGGGTATCTGCTACACGAGCTACCG4730.10518988664844561No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)