FastQCFastQC Report
Sun 21 May 2023
EGAF00007925961

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925961
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490197
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA24110.4918430753350184No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20470.4175872149360359No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA11430.23317156163746414No Hit
ATACAGGCCGGTCTGCGGGCAAACGCTCACACCTTTGACACCGG9350.19073964140947416No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8730.17809166518766945No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8170.16666768666474907No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7020.14320773076946616No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA6750.13769974112448669No Hit
GCCGGACTCGGCGTTCAGACGTTCGTCATCTTCTTTGCGACGCG6480.1321917514795072No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6070.12382776720379765No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5350.10913979481718575No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)