FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925962

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925962
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490197
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT48200.9832781514370753No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30630.6248508252804484No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17210.35108333996332086No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11900.242759543612058No Hit
TCTGGCTACGAAATTGACCACATCGACCTGG9840.20073562261702949No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8380.1709516786108442No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA6940.1415757338376204No Hit
GGTCAGAAAGGTGGCGCGCAGAAGTCCCAGA6880.14035173613873606No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6870.14014773652225532No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6720.13708774227504453No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)