FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925963

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925963
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences452568
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA22820.504233617931449No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19560.43220024394124196No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10000.22096126990861042No Hit
ATACAGGCCGGTCTGCGGGCAAACGCTCACACCTTTGACACCGG8840.1953297625992116No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8040.17765286100652278No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7980.17632709338707112No Hit
GCCGGACTCGGCGTTCAGACGTTCGTCATCTTCTTTGCGACGCG6390.14119425147160206No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6340.140089445122059No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA5450.12042389210019266No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5100.11269024765339132No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)