FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925965

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925965
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456272
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA22030.4828260335939966No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19700.4317600028053442No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10580.2318792299330224No Hit
ATACAGGCCGGTCTGCGGGCAAACGCTCACACCTTTGACACCGG8550.18738822456780166No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8160.17884069151734053No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7640.16744398078339237No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6350.13917137146263633No Hit
GCCGGACTCGGCGTTCAGACGTTCGTCATCTTCTTTGCGACGCG6310.13829470140617878No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA6230.13654136129326366No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5790.1268979906722306No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4810.10541957428902059No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)