FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925966

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925966
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456272
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG66091.4484781007819896No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT49671.0886050426061646No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14850.3254637584598661No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11180.24502928077988567No Hit
TCTGGCTACGAAATTGACCACATCGACCTGG8930.19571659010414838No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8020.17577234631973912No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7060.15473226496475787No Hit
GGTCAGAAAGGTGGCGCGCAGAAGTCCCAGA6760.14815723954132623No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA6210.1361030262650349No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6190.1356646912368061No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4580.10037872146438966No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)