FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925967

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925967
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474966
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12400.26107131878913437No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10190.2145416724565548No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10000.21054138612026968No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8210.17285447800474138No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6570.13832569068101716No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6340.13348323880025098No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6290.13243053186964962No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5400.11369234850494561No Hit
GACGGAGCCGGACTGGGTGAAATCGATGTTGTCGTCACCCTTCA5370.1130607243465848No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT5050.10632339999073617No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5030.10590231721849565No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4910.1033758205850524No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA4850.10211257226833079No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)