FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925968

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925968
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474966
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68721.4468404054184931No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13200.27791462967875596No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13100.2758092158175533No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12650.2663348534421411No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10250.21580492077327643No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8360.17601259879654543No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7450.15685333265960089No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5780.12169292117751587No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5750.12106129701915506No Hit
CCGTCTGGTGAAGCACTGCGTAGCGATAAAC5680.11958750731631317No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5220.10990260355478076No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG4940.10400744474341321No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA4930.10379690335729296No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)