FastQCFastQC Report
Wed 31 May 2023
EGAF00007925975

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925975
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468516
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG20390.4352039204637621No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT19470.4155674512716748No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13510.2883572812881524No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG13290.2836616038726532No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA12500.26679985315336086No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG12100.25826225785245327No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG11830.25249938102434066No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11320.24161394701568356No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9080.1938034133306013No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8490.18121046026176268No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT8420.17971638108410384No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8250.17608790308121816No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7780.1660562286026518No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7760.1656293488376064No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7650.1632815101298568No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7360.15709175353669885No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG7310.1560245541240854No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7140.1523960761211997No Hit
CATGCTGTCCTGCAGCGGCATCGGTGGTGGCGGGAAGCGGGTAG7060.1506885570610182No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6900.14727351894065518No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6820.14556599988047367No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6380.13617464504947538No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6130.13083864798640815No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC5770.12315481221559135No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5500.11739193538747876No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5340.11397689726711574No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5280.1126962579719796No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5090.10864090020404851No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT5090.10864090020404851No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5010.10693338114386702No Hit
CCACTGCGGCGGCAGATGCGGAGCACGCGGGTCCCAAGGGCCCT4920.10501242220116282No Hit
AGTCGGACCCTGCTGGCCTGCCGGCGCACGCAGTGCCAGCTGCA4880.10415866267107206No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC4820.10287802337593593No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4800.10245114361089055No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)