FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925980

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925980
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489762
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45490.9288184873469154No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28690.5857947329519236No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23250.47472037438592624No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11200.2286825029299946No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10930.2231696211629322No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9540.19478848910287036No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7800.15926102882624624No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6720.13720950175799676No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6590.1345551512775593No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6500.13271752402187184No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6500.13271752402187184No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6380.1302673543476219No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4940.1008653182566226No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)