FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925983

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925983
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490269
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13300.2712796444400931No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA11340.23130159157523728No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8620.1758218447423761No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT7920.16154396871921334No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7540.15379312173521067No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7030.1433906692040492No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6490.13237630770046646No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6350.1295207324958339No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA6160.12564530900383258No Hit
ATACAGGCCGGTCTGCGGGCAAACGCTCACACCTTTGACACCGG6030.12299370345667379No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT5910.12054606756698874No Hit
ACCAATGATGGTCGGCGGGGTTTTCGGACGAGAGGTTTCCGGAC5590.1140190385278286No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT5370.109531706063406No Hit
GCTGACAACCAGCTCGTCTTCGCCGTTCGGCGGTGGAGGCGGAA5230.10667613085877344No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5200.10606422188635219No Hit
CGCCAGCAGCGCCAGCTGGCGCGGGGAGACCGCGTCGCCAGCAT5120.10443246462656214No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5080.10361658599666713No Hit
CGGTTTATCTTTCTCGACGTCTTCCGCCAGCGGGAATGCCGGGC4920.10035307147708707No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)