FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007925984

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925984
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490269
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68401.3951524571204788No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15870.3236998464108479No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13330.27189155341251436No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC11410.23272937917755357No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9720.19825850706448908No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8450.1723543605653223No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA8080.1648074832387934No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7480.15256930379036815No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTA7290.14869388029836683No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCG7200.14685815338110303No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA7010.1429827298891017No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6540.13339615598783525No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6370.12992867181078144No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG6220.12686912694867514No Hit
TCTGGCTACGAAATTGACCACATCGACCTGG6080.12401355174404256No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA5680.11585476544509238No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5650.11524285647267112No Hit
CACACCCCTCCGATGCCGTCTATCGGTCTGG5570.11361109921288108No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5460.11136743298066981No Hit
ATGGGTGCAGACATGGTAGAACTGGACATTC5330.10871582743351099No Hit
GGCGCCGAAACCGAAGAAGGTGGTGACGATC5290.10789994880361596No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5220.1064721612012997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)