FastQCFastQC Report
Wed 31 May 2023
EGAF00007925985

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925985
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494095
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG20460.4140904077151155No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG18790.38029123953895505No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG15530.31431202501543226No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG15140.3064188061000415No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG15000.3035853428996448No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13930.28192958843947014No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG13840.2801080763820723No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG12590.2548092978071019No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG12130.24549934729151277No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA11820.23922525020492008No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG11400.23072486060373007No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG11160.22586749511733575No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG10580.21412886185854949No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG9490.19206832694117526No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9420.19065159534097695No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8220.16636476790900537No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG7510.15199506167842217No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG7170.14511379390603021No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG7130.14430423299163114No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG6620.13398233133304324No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG6600.1335775508758437No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6520.1319584290470456No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6320.12791062447505033No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG6150.12446999058885438No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG6060.1226484785314565No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT5580.11293374755866788No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT5490.11111223550127No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG5350.10827877230087332No Hit
GGTGCCGTTTGCTTTGGCGATGTCGTTTACGGTATCACCCGGTT5300.10726682115787449No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT5280.10686204070067497No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT5270.10665965047207521No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5160.10443335795747781No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)