FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007925986

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925986
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494095
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29220.5913842479685081No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG23140.46833098897985204No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG22070.4466752345196774No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC20560.41611431000111315No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG18590.3762434349669598No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG18110.36652870399417115No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC16770.3394084133618029No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG15650.31674070775862945No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG14400.291441929183659No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14050.2843582711826673No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC14020.283751100496868No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC13330.2697861747234844No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG12810.25926188283629664No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT12220.24732085934891065No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG11410.23092725083232982No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9840.199151984942167No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG9810.1985448142563677No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC9080.18377032756858497No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9010.18235359596838666No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG7590.15361418350722028No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG7290.14754247664922737No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG7170.14511379390603021No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG7080.14329228184863235No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6650.13458950201884254No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6400.12952974630384845No Hit
GAGGATAACAACAAACCGGGTAAGGAAGATG6160.12467238081745413No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG5900.1194102348738603No Hit
GATATTCGTGTTTACGGCATGAACGGCTGCA5640.11414808893026646No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5500.11131462572986978No Hit
CCGTCTGGCTGGTACAGCTATTTTTTCAAAA5460.1105050648154707No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG5460.1105050648154707No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC5380.10888594298667259No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5160.10443335795747781No Hit
GGCTCCGCGCAAGAACAGTCTCGCGATGGCA5090.10301662635727948No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)