FastQCFastQC Report
Wed 31 May 2023
EGAF00007925988

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007925988
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516129
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT49920.9672000604500038No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30980.6002375375148461No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14250.27609376725586043No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG13070.2532312658269541No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10560.20460001278750078No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA10500.20343751271484456No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8890.17224376076523507No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8730.16914376057148503No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8500.1646875102929694No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8170.15829375989336No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG6340.12283750767734423No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6030.11683125730195358No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5680.11005000687812543No Hit
AACGTAACCACCAACCAGGACGGCACCGTCT5360.10385000649062541No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)